miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|82651850|gb|DV798935.1|DV798935 AAAATGGGGGCTCCCCGGCGGCACGAGGGTCCTCCAGTATTCACAGGTGAGCTCCCCAACGGCCACTGTTCAGGATGGAG
GCCATCAAGAAAAAGATGCAGATGCTGAAGCTGGACAAGGAGAACGCTCTGGATCGGGCAGAACAAGCGGAAGCTGAGCA
GAAGCAGGCAGAAGAAAGAAGTAAGCAGCTGGAAGATGAGCTGGCAGCCATGCAGAAGAAGCTGAAAGGGACAGAGGACG
AGCTGGACAAGTATTCTGAAGCTTTGAAGGATGCCCAGGAGAAGCTGGAGCTGGCAGAGAAGAAAGCAGCTGATGCTGAG
GCTGAGGTGGCCTCCTTGAACCGTAGGATCCAGCTGGTTGAAGAGGAGCTGGACCGAGCTCAAGAGCGCCTGGCCACTGC
CCTGCAAAAGCTGGAGGAAGCTGAGAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGAGCCTTAA
AAGATGAAGAAAAAATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGACAGGAAGTAT
GAAGAGGTGGCTCGCAAGTTGGTGATTATTGAGGGAGACTTGGAGCGCACAGAGGAGCGAGCCGAGCTGGCAGAGTCTAA
ATGTTCTGAGCTGGAGGAGGAGCTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGTACTCTC
AAAAAGAAGACAAATATGAGGAAGAGATAAAGATTCTTACCGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCT
GAGAGATCGGTAGCCAAGCTGGAAAAGACAATTGATGATTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGC
CATTAGCGAGGAGCTGGACCACGCCCTCAATGACATGACCTCTATATAATTATCACCGTTTCTGCTCTGTTCTGGATCTA
CCCCCTTTCCTCGGGGAACCCAACGCCCCACTCTCGCTCTGGATTCCCATTGGGTCAGCCTGGCTGATCCCCAAGGCATT
AGATGGGGGGGGGGGCGGGGAGGGGGCACCAAAACAACTTAAGTATTCTCTTTCCCCCCTCCCCCCAAATTTAAAAGTTT
AACTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAACCCCGGGGGGGGGGGGGCCCCGGGGCCCCCCACATTTTTCCCCCCCCTCCATAATGATGGGGAGGATTGAA
AAA




Most similar to sp|P06753|TPM3_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P06753|TPM3_HUMAN Tropomyosin alpha-3 chain OS=Homo sapiens
           GN=TPM3 PE=1 SV=1
          Length = 284

 Score =  361 bits (926), Expect = 7e-99
 Identities = 206/284 (72%), Positives = 206/284 (72%)
 Frame = +3

Query: 75  MEAIKKKMQMLKLDKENALDRXXXXXXXXXXXXXRSKQLEDELAAMQKKLKGTEDELDKY 254
           MEAIKKKMQMLKLDKENALDR             RSKQLEDELAAMQKKLKGTEDELDKY
Sbjct: 1   MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60

Query: 255 SXXXXXXXXXXXXXXXXXXXXXXXVASLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXX 434
           S                       VASLNRRIQLVEEELDRAQER               
Sbjct: 61  SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120

Query: 435 XXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXX 614
               RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGD     
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVARKLVIIEGDLERTE 180

Query: 615 XXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 794
                             NVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE
Sbjct: 181 ERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAE 240

Query: 795 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 926
           FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI
Sbjct: 241 FAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284